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OmniCellX provides a browser-based interface to analyze or visualize single-cell data. It offers two modes: an Analysis mode with tools for dimensionality reduction, clustering, differential expression, cell–cell communication, and trajectory inference, and a Visualization mode with interactive, publication-ready figures; it supports multiple single-cell platforms and uses AnnData for efficient handling, scalable to millions of cells. The project is distributed via Docker for easy installation on local machines or servers, with comprehensive documentation.
AI named OmniCellX from February 2026 to March 2026.