What AI says about SoupX

SoupX is an R package that quantifies, profiles, and removes ambient mRNA contamination (the "soup") from droplet-based single-cell RNA-seq experiments. It implements the method described by Young et al. (2018) and provides documentation, vignettes, and demonstrations, with dependencies including R (≥3.5.0), ggplot2, Matrix, methods, and Seurat (≥3.2.2). Maintained by Matthew Daniel Young, SoupX is available on CRAN as version 1.6.2 (GPL-2) with reference manuals and tutorials.